STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hemNCoproporphyrinogen III oxidase; Belongs to the anaerobic coproporphyrinogen-III oxidase family. (460 aa)    
Predicted Functional Partners:
hemE
Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.
 
 
 0.951
hemJ
Hypothetical protein.
 
  
 0.924
hemF
Coproporphyrinogen III oxidase; Involved in the heme biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen- IX.
    
 0.917
AIL61335.1
Fe-S oxidoreductase, coproporphyrinogen III oxidase.
  
  
 
0.909
AIL61336.1
Oxygen-independent coproporphyrinogen III oxidase.
  
  
 
0.904
ccoG-2
Cytochrome c oxidase accessory protein CcoG.
 
  
 0.714
AIL62812.1
Membrane protein.
 
   
 0.702
AIL62814.1
Crp/FNR family transcriptional regulator.
 
  
 0.690
ccoO-2
Cbb3-type cytochrome c oxidase subunit II.
 
  
 0.683
ccoN-2
Cbb3-type cytochrome c oxidase subunit I; Belongs to the heme-copper respiratory oxidase family.
 
  
 0.682
Your Current Organism:
Pseudomonas alkylphenolica
NCBI taxonomy Id: 237609
Other names: JCM 16553, KCTC 22206, P. alkylphenolica, Pseudomonas alkylphenolia, Pseudomonas alkylphenolica Mulet et al. 2015, Pseudomonas sp. KL28, strain KL28
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