STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AIL64312.1Oxidative stress regulatory protein OxyR; Belongs to the LysR transcriptional regulatory family. (306 aa)    
Predicted Functional Partners:
recG
ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily.
     
 0.786
AIL60279.1
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.670
AIL62860.1
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.661
AIL61039.1
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.624
AIL61586.1
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.609
AIL64314.1
Signal transduction protein.
       0.572
AIL62377.1
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.566
exbB
TonB-system energizer ExbB type-1.
       0.558
AIL64310.1
Biopolymer transport protein ExbD.
       0.558
AIL64311.1
Periplasmic energy transduction protein TonB.
       0.556
Your Current Organism:
Pseudomonas alkylphenolica
NCBI taxonomy Id: 237609
Other names: JCM 16553, KCTC 22206, P. alkylphenolica, Pseudomonas alkylphenolia, Pseudomonas alkylphenolica Mulet et al. 2015, Pseudomonas sp. KL28, strain KL28
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