STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APQ11030.1Lytic transglycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (192 aa)    
Predicted Functional Partners:
APQ11029.1
Integrating conjugative element protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.953
APQ11031.1
Integrating conjugative element protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.953
APQ11033.1
Conjugative coupling factor TraD, PFGI-1 class; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.953
APQ11035.1
Integrating conjugative element membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.943
APQ11066.1
Conjugative transfer ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.814
APQ10989.1
Pilus assembly protein PilL; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.804
APQ11062.1
Integrating conjugative element protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.803
APQ11064.1
Integrating conjugative element protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.803
APQ11063.1
Integrating conjugative element protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.802
APQ11065.1
Conjugal transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.802
Your Current Organism:
Pseudomonas psychrotolerans
NCBI taxonomy Id: 237610
Other names: CCUG 51516, DSM 15758, LMG 21977, LMG:21977, P. psychrotolerans, Pseudomonas psychrotolerans Hauser et al. 2004, Pseudomonas sp. C36, strain C36
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