STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APQ12161.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (183 aa)    
Predicted Functional Partners:
APQ12162.1
Methionine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.981
APQ12164.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.976
APQ12163.1
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.953
APQ14503.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.853
APQ12165.1
Outer membrane protein OmpW; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.647
znuC
Zinc ABC transporter ATP-binding protein ZnuC; Part of the ABC transporter complex ZnuABC involved in zinc import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Zinc importer (TC 3.A.1.15.5) family.
  
  
 0.629
APQ12160.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.601
APQ10497.1
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.591
APQ13073.1
Peptidase M23; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.551
APQ11430.1
RNA polymerase-binding protein DksA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.526
Your Current Organism:
Pseudomonas psychrotolerans
NCBI taxonomy Id: 237610
Other names: CCUG 51516, DSM 15758, LMG 21977, LMG:21977, P. psychrotolerans, Pseudomonas psychrotolerans Hauser et al. 2004, Pseudomonas sp. C36, strain C36
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