STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UMAG_02981Chromosome 7, whole genome shotgun sequence. (223 aa)    
Predicted Functional Partners:
UMAG_05512
MFAP1 domain-containing protein.
   
 0.797
PRP5
Pre-mRNA-processing ATP-dependent RNA helicase PRP5; ATP-dependent RNA helicase involved spliceosome assembly and in nuclear splicing. Catalyzes an ATP-dependent conformational change of U2 snRNP. Bridges U1 and U2 snRNPs and enables stable U2 snRNP association with intron RNA (By similarity); Belongs to the DEAD box helicase family. DDX46/PRP5 subfamily.
   
  0.789
UMAG_04599
PRP38_assoc domain-containing protein.
   
 0.767
UMAG_05159
U1-type domain-containing protein.
    
  0.746
CEF1
Pre-mRNA-splicing factor CEF1; Involved in pre-mRNA splicing and cell cycle control.
   
  0.674
UMAG_05241
Putative splicing factor 3b subunit 1.
   
 
 0.672
UMAG_06130
Chromosome 21, whole genome shotgun sequence.
   
   0.661
UMAG_00305
Chromosome 1, whole genome shotgun sequence.
   
   0.660
PRP45
Pre-mRNA-processing protein 45; Involved in pre-mRNA splicing.
   
 0.659
UMAG_10535
Uncharacterized protein.
   
  0.655
Your Current Organism:
Ustilago maydis
NCBI taxonomy Id: 237631
Other names: U. maydis 521, Ustilago maydis 521
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.