SFA70315.1 protein (Lentibacillus halodurans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

SFA70315.1

Hypothetical protein. (157 aa)

Predicted Functional Partners:

SFA70295.1

0.969

SFA70274.1

0.926

SFA70712.1

0.669

SFA95366.1

0.635

SFA70327.1

0.623

SFA70367.1

0.582

SFA70348.1

0.571

SFA70382.1

0.479

ybeY

0.479

SFA70409.1

0.479

Your Current Organism:

Lentibacillus halodurans

NCBI taxonomy Id: 237679
Other names: Bacillaceae bacterium 8-1, CGMCC 1.3702, DSM 18342, L. halodurans, Lentibacillus halodurans Yuan et al. 2007, strain 8-1

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SFA70274.1	SFA70295.1	SAMN04488072_101114	SAMN04488072_101115	Membrane-bound serine protease (ClpP class).	Uncharacterized protein YqfA, UPF0365 family.	0.996
SFA70274.1	SFA70315.1	SAMN04488072_101114	SAMN04488072_101116	Membrane-bound serine protease (ClpP class).	Hypothetical protein.	0.926
SFA70274.1	SFA70327.1	SAMN04488072_101114	SAMN04488072_101117	Membrane-bound serine protease (ClpP class).	Sporulation protein YqfC.	0.535
SFA70274.1	SFA70348.1	SAMN04488072_101114	SAMN04488072_101118	Membrane-bound serine protease (ClpP class).	Similar to stage IV sporulation protein.	0.522
SFA70274.1	SFA70367.1	SAMN04488072_101114	SAMN04488072_101119	Membrane-bound serine protease (ClpP class).	Phosphate starvation-inducible protein PhoH.	0.524
SFA70274.1	SFA70382.1	SAMN04488072_101114	SAMN04488072_101120	Membrane-bound serine protease (ClpP class).	Hypothetical protein.	0.433
SFA70274.1	SFA70409.1	SAMN04488072_101114	SAMN04488072_101122	Membrane-bound serine protease (ClpP class).	Diacylglycerol kinase (ATP).	0.449
SFA70274.1	SFA95366.1	SAMN04488072_101114	SAMN04488072_104118	Membrane-bound serine protease (ClpP class).	Flotillin.	0.630
SFA70274.1	ybeY	SAMN04488072_101114	SAMN04488072_101121	Membrane-bound serine protease (ClpP class).	Probable rRNA maturation factor; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.	0.462
SFA70295.1	SFA70274.1	SAMN04488072_101115	SAMN04488072_101114	Uncharacterized protein YqfA, UPF0365 family.	Membrane-bound serine protease (ClpP class).	0.996
SFA70295.1	SFA70315.1	SAMN04488072_101115	SAMN04488072_101116	Uncharacterized protein YqfA, UPF0365 family.	Hypothetical protein.	0.969
SFA70295.1	SFA70327.1	SAMN04488072_101115	SAMN04488072_101117	Uncharacterized protein YqfA, UPF0365 family.	Sporulation protein YqfC.	0.554
SFA70295.1	SFA70348.1	SAMN04488072_101115	SAMN04488072_101118	Uncharacterized protein YqfA, UPF0365 family.	Similar to stage IV sporulation protein.	0.539
SFA70295.1	SFA70367.1	SAMN04488072_101115	SAMN04488072_101119	Uncharacterized protein YqfA, UPF0365 family.	Phosphate starvation-inducible protein PhoH.	0.539
SFA70295.1	SFA70382.1	SAMN04488072_101115	SAMN04488072_101120	Uncharacterized protein YqfA, UPF0365 family.	Hypothetical protein.	0.459
SFA70295.1	SFA70409.1	SAMN04488072_101115	SAMN04488072_101122	Uncharacterized protein YqfA, UPF0365 family.	Diacylglycerol kinase (ATP).	0.479
SFA70295.1	SFA70712.1	SAMN04488072_101115	SAMN04488072_101140	Uncharacterized protein YqfA, UPF0365 family.	NfeD-like C-terminal, partner-binding.	0.955
SFA70295.1	SFA95366.1	SAMN04488072_101115	SAMN04488072_104118	Uncharacterized protein YqfA, UPF0365 family.	Flotillin.	0.851
SFA70295.1	ybeY	SAMN04488072_101115	SAMN04488072_101121	Uncharacterized protein YqfA, UPF0365 family.	Probable rRNA maturation factor; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.	0.488
SFA70315.1	SFA70274.1	SAMN04488072_101116	SAMN04488072_101114	Hypothetical protein.	Membrane-bound serine protease (ClpP class).	0.926