STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFA68974.1Stage IV sporulation protein FA. (253 aa)    
Predicted Functional Partners:
SFA68986.1
Stage IV sporulation protein FB.
 
  
 0.955
SFA69180.1
Putative membrane protein, TIGR04086 family.
  
    0.801
SFB31863.1
Ca-activated chloride channel family protein.
  
    0.792
SFA68844.1
Stage VI sporulation protein D.
  
   
 0.781
SFB31369.1
Inhibitor of the pro-sigma K processing machinery.
  
   
 0.778
SFA71575.1
Conserved membrane protein YqhR.
  
     0.771
SFA71741.1
Stage III sporulation protein AF.
  
    0.769
SFA71333.1
Protein YqhG of unknown function.
  
     0.763
SFB24954.1
Hypothetical protein.
  
     0.763
SFB31802.1
Spore cortex biosynthesis protein YabQ.
  
     0.762
Your Current Organism:
Lentibacillus halodurans
NCBI taxonomy Id: 237679
Other names: Bacillaceae bacterium 8-1, CGMCC 1.3702, DSM 18342, L. halodurans, Lentibacillus halodurans Yuan et al. 2007, strain 8-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.