STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFA68852.1Spore coat protein YsxE. (336 aa)    
Predicted Functional Partners:
SFA68844.1
Stage VI sporulation protein D.
 
  
 0.938
SFA91267.1
Spore coat protein YutH.
  
   
 0.812
SFB24122.1
Germination protein M.
  
    0.796
SFA69180.1
Putative membrane protein, TIGR04086 family.
  
    0.792
SFB29704.1
YaaC-like Protein.
  
     0.773
SFB24591.1
Putative sporulation protein YtxC.
  
     0.770
SFA70687.1
Hypothetical protein.
  
     0.757
SFA70781.1
MFS transporter, YQGE family, putative transporter.
  
    0.755
SFB31802.1
Spore cortex biosynthesis protein YabQ.
  
     0.745
SFB18606.1
Putative coat protein.
  
     0.743
Your Current Organism:
Lentibacillus halodurans
NCBI taxonomy Id: 237679
Other names: Bacillaceae bacterium 8-1, CGMCC 1.3702, DSM 18342, L. halodurans, Lentibacillus halodurans Yuan et al. 2007, strain 8-1
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.