Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SFA81990.1Spore germination protein PE. (126 aa)    
Predicted Functional Partners:
SFA82002.1
Spore germination protein PD.
  
  
 0.983
SFA82015.1
Spore germination protein PC.
  
  
 0.956
SFA82030.1
Spore germination protein PB.
  
  
 0.956
SFA82041.1
Spore germination protein PA.
  
  
 0.948
SFA81973.1
Spore germination protein PF.
  
  
 0.943
SFA85575.1
Spore coat protein F.
   
  
 0.690
SFA91934.1
NitT/TauT family transport system substrate-binding protein.
   
    0.556
SFA82056.1
Uncharacterized protein.
       0.459
Your Current Organism:
Lentibacillus halodurans
NCBI taxonomy Id: 237679
Other names: Bacillaceae bacterium 8-1, CGMCC 1.3702, DSM 18342, L. halodurans, Lentibacillus halodurans Yuan et al. 2007, strain 8-1
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