Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SFA83274.1Subtilase family protein. (858 aa)    
Predicted Functional Partners:
SFA83259.1
ATPase family associated with various cellular activities (AAA); Belongs to the AAA ATPase family.
    0.983
SFB29254.1
Regulator of chromosome condensation (RCC1) repeat-containing protein.
   
 0.584
SFB19478.1
Hypothetical protein.
  
 
 0.465
SFB01718.1
Alpha-1,2-mannosidase, putative.
  
 0.443
SFB06711.1
Hypothetical protein.
  
 0.443
SFB15224.1
Protein of unknown function.
  
 0.443
SFB20614.1
Hypothetical protein.
  
 0.443
SFB19530.1
Ca2+-transporting ATPase.
   
 
 0.431
Your Current Organism:
Lentibacillus halodurans
NCBI taxonomy Id: 237679
Other names: Bacillaceae bacterium 8-1, CGMCC 1.3702, DSM 18342, L. halodurans, Lentibacillus halodurans Yuan et al. 2007, strain 8-1
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