Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SFA81429.1DNA-binding transcriptional regulator GbsR, MarR family; Belongs to the GbsR family. (157 aa)    
Predicted Functional Partners:
SFA70712.1
NfeD-like C-terminal, partner-binding.
  
     0.577
SFB25987.1
Uncharacterized beta-barrel protein YwiB, DUF1934 family.
  
     0.522
SFB39403.1
Tetratricopeptide repeat-containing protein.
  
     0.503
SFA94335.1
Hypothetical protein.
  
     0.496
SFA82167.1
Scaffold protein Nfu/NifU N terminal.
  
     0.486
SFB34300.1
Hypothetical protein.
  
     0.473
SFB29942.1
Uncharacterized membrane protein YkvI.
  
     0.449
SFA88197.1
FlgN protein.
  
     0.445
SFB18075.1
Putative cell-wall binding lipoprotein.
  
     0.441
SFB07129.1
Protein of unknown function.
  
     0.434
Your Current Organism:
Lentibacillus halodurans
NCBI taxonomy Id: 237679
Other names: Bacillaceae bacterium 8-1, CGMCC 1.3702, DSM 18342, L. halodurans, Lentibacillus halodurans Yuan et al. 2007, strain 8-1
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