STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFA89227.1Oligopeptide transport system ATP-binding protein; Belongs to the ABC transporter superfamily. (331 aa)    
Predicted Functional Partners:
SFA89280.1
Peptide/nickel transport system permease protein.
 
  0.973
SFB14145.1
Peptide/nickel transport system permease protein.
 
 
  0.966
SFA96997.1
Peptide/nickel transport system permease protein.
 
 
  0.960
SFB10489.1
Peptide/nickel transport system permease protein.
 
 
  0.958
SFA84718.1
Peptide/nickel transport system permease protein.
 
 
  0.957
SFB26657.1
Dipeptide transport system permease protein.
 
 
  0.957
SFA96883.1
Oligopeptide transport system permease protein.
 
 
  0.955
SFA89210.1
Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
    
0.803
SFA82947.1
ATP-binding cassette, subfamily B.
 
   
 
0.771
SFB12713.1
Energy-coupling factor transport system ATP-binding protein.
 
    
0.734
Your Current Organism:
Lentibacillus halodurans
NCBI taxonomy Id: 237679
Other names: Bacillaceae bacterium 8-1, CGMCC 1.3702, DSM 18342, L. halodurans, Lentibacillus halodurans Yuan et al. 2007, strain 8-1
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