Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SFA90046.1Phage shock protein A (PspA) family protein. (209 aa)    
Predicted Functional Partners:
SFA90028.1
Lia operon protein LiaI.
 
  
 0.942
SFA88749.1
Phage shock protein C (PspC) family protein.
  
 
 0.926
SFA90065.1
Lia operon protein LiaF.
 
  
 0.918
SFB32915.1
Transcriptional regulator containing an AAA-type ATPase domain and a DNA-binding domain.
   
 
 0.801
SFA90084.1
Two-component system, NarL family, sensor histidine kinase LiaS.
 
  
 0.729
SFB30395.1
YpjP-like protein.
  
     0.682
SFB24360.1
Putative membrane protein.
 
     0.667
SFA83648.1
MotA/TolQ/ExbB proton channel family protein.
  
     0.654
SFB25952.1
Hypothetical protein.
  
     0.638
SFB26875.1
DNA-directed RNA polymerase subunit beta.
  
     0.613
Your Current Organism:
Lentibacillus halodurans
NCBI taxonomy Id: 237679
Other names: Bacillaceae bacterium 8-1, CGMCC 1.3702, DSM 18342, L. halodurans, Lentibacillus halodurans Yuan et al. 2007, strain 8-1
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