Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SFA93844.1Restriction endonuclease. (103 aa)    
Predicted Functional Partners:
rny
Ribonucrease Y; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family.
   
    0.729
SFB36170.1
Hypothetical protein.
  
     0.701
SFA92048.1
Hypothetical protein.
  
     0.658
SFA96618.1
Hypothetical protein.
  
     0.653
SFB19524.1
Predicted component of the ribosome quality control (RQC) complex, YloA/Tae2 family, contains fibronectin-binding (FbpA) and DUF814 domains.
  
    0.639
SFB24591.1
Putative sporulation protein YtxC.
  
     0.615
SFB06964.1
Predicted arabinose efflux permease, MFS family.
  
    0.530
SFB15326.1
Tetratricopeptide repeat-containing protein.
  
     0.520
SFA93858.1
Hypothetical protein.
       0.484
SFA93869.1
Hypothetical protein.
       0.484
Your Current Organism:
Lentibacillus halodurans
NCBI taxonomy Id: 237679
Other names: Bacillaceae bacterium 8-1, CGMCC 1.3702, DSM 18342, L. halodurans, Lentibacillus halodurans Yuan et al. 2007, strain 8-1
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