STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFA94538.1Ferredoxin subunit of nitrite reductase or a ring-hydroxylating dioxygenase. (119 aa)    
Predicted Functional Partners:
SFA94558.1
Predicted metal-dependent hydrolase, TIM-barrel fold.
 
  
  0.963
SFB01332.1
3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase subunit.
 
 0.943
SFB16030.1
NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase.
  
 0.898
SFB01269.1
Predicted metal-dependent hydrolase, TIM-barrel fold.
 
  
  0.843
SFA96006.1
Glutamate synthase (NADPH/NADH) large chain.
  
 
 0.835
SFA84113.1
Sarcosine oxidase subunit alpha.
  
  0.626
SFB14769.1
Sarcosine oxidase subunit alpha.
  
  0.626
SFB11248.1
Nitric oxide dioxygenase; Belongs to the globin family.
  
 
 0.521
SFA75767.1
L-glutamine synthetase.
     
 0.496
SFB22091.1
Cytochrome aa3-600 menaquinol oxidase subunit 4.
  
     0.486
Your Current Organism:
Lentibacillus halodurans
NCBI taxonomy Id: 237679
Other names: Bacillaceae bacterium 8-1, CGMCC 1.3702, DSM 18342, L. halodurans, Lentibacillus halodurans Yuan et al. 2007, strain 8-1
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