Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SFB00114.1Transcriptional antiterminator, BglG family. (685 aa)    
Predicted Functional Partners:
SFB00143.1
PTS system, galactitol-specific IIB component.
 
 
 0.990
SFB10988.1
PTS system D-mannose-specific IIA component, Fru family (TC 4.A.2.1.6)/PTS system D-mannose-specific IIB component, Fru family (TC 4.A.2.1.6)/PTS system D-mannose-specific IIC component, Fru family (TC 4.A.2.1.6).
  
 
 0.970
SFB11182.1
Uncharacterized protein; PTS system D-fructose-specific IIA component (F1P-forming), Frc family (TC 4.A.2.1.4)/PTS system D-fructose-specific IIB component (F1P-forming), Frc family (TC 4.A.2.1.4)/PTS system D-fructose-specific IIC component (F1P-forming), Frc family (TC 4.A.2.1.4).
  
 
 0.970
SFB00127.1
PTS system IIA component, Gat family (TC 4.A.5).
 
    0.953
SFB00029.1
PTS system IIC component, L-Asc family (TC 4.A.7).
 
 
 0.950
SFB00702.1
PTS system, mannitol-specific IIC component.
 
 
 0.946
SFB00016.1
PTS system IIB component, L-Asc family (TC 4.A.7).
 
 
 0.945
SFB00155.1
PTS system IIC component, Gat family (TC 4.A.5).
 
 
 0.924
mtlD
D-mannitol 1-phosphate 5-dehydrogenase.
 
 
 0.916
SFB04689.1
PTS system trehalose-specific IIB component, Glc family (TC 4.A.1.2.8)/PTS system trehalose-specific IIC component, Glc family (TC 4.A.1.2.8).
 
 0.914
Your Current Organism:
Lentibacillus halodurans
NCBI taxonomy Id: 237679
Other names: Bacillaceae bacterium 8-1, CGMCC 1.3702, DSM 18342, L. halodurans, Lentibacillus halodurans Yuan et al. 2007, strain 8-1
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