Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SFB00155.1PTS system IIC component, Gat family (TC 4.A.5). (419 aa)    
Predicted Functional Partners:
SFB00143.1
PTS system, galactitol-specific IIB component.
 
 0.999
SFB00127.1
PTS system IIA component, Gat family (TC 4.A.5).
 
 
 0.993
SFB00114.1
Transcriptional antiterminator, BglG family.
 
 
 0.924
SFB00171.1
L-iditol 2-dehydrogenase.
 
 
  0.916
SFB00211.1
L-iditol 2-dehydrogenase.
 
  0.886
SFA91487.1
Phosphocarrier protein.
    
  0.823
SFA89174.1
Phosphotransferase system HPr (HPr) family.
    
  0.784
SFA99985.1
Transcriptional antiterminator, BglG family.
 
 
 0.725
SFB00296.1
PTS system, glucitol/sorbitol-specific IIC component.
 
   
 0.705
SFB00311.1
PTS system, glucitol/sorbitol-specific IIC component.
 
     0.697
Your Current Organism:
Lentibacillus halodurans
NCBI taxonomy Id: 237679
Other names: Bacillaceae bacterium 8-1, CGMCC 1.3702, DSM 18342, L. halodurans, Lentibacillus halodurans Yuan et al. 2007, strain 8-1
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