Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
SFB00226.1DNA-binding transcriptional regulator LsrR, DeoR family. (315 aa)    
Predicted Functional Partners:
SFA88971.1
Dihydroxyacetone kinase, N-terminal domain.
  
  0.939
SFB00278.1
Glucitol operon activator protein.
 
     0.762
SFB00340.1
Predicted homoserine dehydrogenase, contains C-terminal SAF domain.
 
     0.745
SFB00296.1
PTS system, glucitol/sorbitol-specific IIC component.
 
     0.724
SFB00311.1
PTS system, glucitol/sorbitol-specific IIC component.
 
     0.719
SFB00324.1
PTS system, glucitol/sorbitol-specific IIA component.
 
     0.719
SFB00155.1
PTS system IIC component, Gat family (TC 4.A.5).
 
     0.518
SFB00127.1
PTS system IIA component, Gat family (TC 4.A.5).
 
     0.502
SFB00143.1
PTS system, galactitol-specific IIB component.
 
     0.481
SFB00211.1
L-iditol 2-dehydrogenase.
       0.481
Your Current Organism:
Lentibacillus halodurans
NCBI taxonomy Id: 237679
Other names: Bacillaceae bacterium 8-1, CGMCC 1.3702, DSM 18342, L. halodurans, Lentibacillus halodurans Yuan et al. 2007, strain 8-1
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