STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFB07599.1Trk system potassium uptake protein TrkA. (224 aa)    
Predicted Functional Partners:
SFB07621.1
Trk system potassium uptake protein TrkH.
 
 0.985
SFB07583.1
Trk-type K+ transport system, membrane component.
 
 0.966
SFB24052.1
Cation transport protein.
 
 
 0.938
SFB24067.1
Cation transport protein.
 
 
 0.938
cinA
Nicotinamide-nucleotide amidase; Belongs to the CinA family.
    
 0.762
SFB19645.1
16S rRNA (cytosine967-C5)-methyltransferase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
  
   0.668
SFA82256.1
Molybdopterin synthase subunit MoaE.
   
    0.611
SFB07640.1
Trk K+ transport system, NAD-binding component.
       0.581
SFA68825.1
uroporphyrinogen-III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III.
  
    0.441
SFA69749.1
Multicomponent Na+:H+ antiporter subunit A.
     
 0.410
Your Current Organism:
Lentibacillus halodurans
NCBI taxonomy Id: 237679
Other names: Bacillaceae bacterium 8-1, CGMCC 1.3702, DSM 18342, L. halodurans, Lentibacillus halodurans Yuan et al. 2007, strain 8-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.