Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SFB04654.1Mn-containing catalase. (287 aa)    
Predicted Functional Partners:
SFB06998.1
Fatty-acid peroxygenase.
  
    0.724
SFB05265.1
Glyoxylase, beta-lactamase superfamily II.
  
     0.603
SFA85561.1
S-(hydroxymethyl)glutathione dehydrogenase / alcohol dehydrogenase.
 
     0.597
SFB04643.1
Protein of unknown function.
       0.550
SFA95151.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
  
  
 0.430
SFA84290.1
Catalase.
   
  
 0.426
SFB04628.1
Transcriptional regulator, ArsR family.
       0.423
Your Current Organism:
Lentibacillus halodurans
NCBI taxonomy Id: 237679
Other names: Bacillaceae bacterium 8-1, CGMCC 1.3702, DSM 18342, L. halodurans, Lentibacillus halodurans Yuan et al. 2007, strain 8-1
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