Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SFB18606.1Putative coat protein. (131 aa)    
Predicted Functional Partners:
SFB18619.1
YlbE-like protein.
  
    0.936
SFA71575.1
Conserved membrane protein YqhR.
  
     0.774
SFA82413.1
Protein of unknown function.
  
     0.774
SFA70687.1
Hypothetical protein.
  
    0.772
SFA91267.1
Spore coat protein YutH.
  
  
 0.772
SFB24954.1
Hypothetical protein.
  
     0.772
SFB31369.1
Inhibitor of the pro-sigma K processing machinery.
  
     0.772
SFA68844.1
Stage VI sporulation protein D.
  
   
 0.770
SFA69180.1
Putative membrane protein, TIGR04086 family.
  
     0.768
SFB31802.1
Spore cortex biosynthesis protein YabQ.
  
     0.767
Your Current Organism:
Lentibacillus halodurans
NCBI taxonomy Id: 237679
Other names: Bacillaceae bacterium 8-1, CGMCC 1.3702, DSM 18342, L. halodurans, Lentibacillus halodurans Yuan et al. 2007, strain 8-1
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