SFB22315.1 protein (Lentibacillus halodurans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

SFB22315.1

Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family. (235 aa)

Predicted Functional Partners:

SFB22342.1

0.999

SFB22354.1

0.999

SFB22327.1

0.997

SFB22301.1

0.986

SFB12725.1

0.753

SFA83384.1

0.697

SFB04576.1

0.560

SFB07188.1

0.488

atpC

0.410

Your Current Organism:

Lentibacillus halodurans

NCBI taxonomy Id: 237679
Other names: Bacillaceae bacterium 8-1, CGMCC 1.3702, DSM 18342, L. halodurans, Lentibacillus halodurans Yuan et al. 2007, strain 8-1

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SFA83384.1	SFB12725.1	SAMN04488072_102194	SAMN04488072_107182	Amino acid ABC transporter membrane protein, PAAT family (TC 3.A.1.3.-).	Energy-coupling factor transport system ATP-binding protein.	0.491
SFA83384.1	SFB22315.1	SAMN04488072_102194	SAMN04488072_11078	Amino acid ABC transporter membrane protein, PAAT family (TC 3.A.1.3.-).	Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family.	0.697
SFB04576.1	SFB22315.1	SAMN04488072_10621	SAMN04488072_11078	ABC-2 type transport system permease protein.	Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family.	0.560
SFB07188.1	SFB22315.1	SAMN04488072_106194	SAMN04488072_11078	ABC-2 type transport system permease protein.	Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family.	0.488
SFB12725.1	SFA83384.1	SAMN04488072_107182	SAMN04488072_102194	Energy-coupling factor transport system ATP-binding protein.	Amino acid ABC transporter membrane protein, PAAT family (TC 3.A.1.3.-).	0.491
SFB12725.1	SFB22315.1	SAMN04488072_107182	SAMN04488072_11078	Energy-coupling factor transport system ATP-binding protein.	Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family.	0.753
SFB22301.1	SFB22315.1	SAMN04488072_11077	SAMN04488072_11078	Amino acid/amide ABC transporter substrate-binding protein, HAAT family.	Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family.	0.986
SFB22301.1	SFB22327.1	SAMN04488072_11077	SAMN04488072_11079	Amino acid/amide ABC transporter substrate-binding protein, HAAT family.	Amino acid/amide ABC transporter ATP-binding protein 1, HAAT family.	0.986
SFB22301.1	SFB22342.1	SAMN04488072_11077	SAMN04488072_11080	Amino acid/amide ABC transporter substrate-binding protein, HAAT family.	Amino acid/amide ABC transporter membrane protein 2, HAAT family; Belongs to the binding-protein-dependent transport system permease family.	0.999
SFB22301.1	SFB22354.1	SAMN04488072_11077	SAMN04488072_11081	Amino acid/amide ABC transporter substrate-binding protein, HAAT family.	Amino acid/amide ABC transporter membrane protein 1, HAAT family; Belongs to the binding-protein-dependent transport system permease family.	0.998
SFB22315.1	SFA83384.1	SAMN04488072_11078	SAMN04488072_102194	Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family.	Amino acid ABC transporter membrane protein, PAAT family (TC 3.A.1.3.-).	0.697
SFB22315.1	SFB04576.1	SAMN04488072_11078	SAMN04488072_10621	Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family.	ABC-2 type transport system permease protein.	0.560
SFB22315.1	SFB07188.1	SAMN04488072_11078	SAMN04488072_106194	Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family.	ABC-2 type transport system permease protein.	0.488
SFB22315.1	SFB12725.1	SAMN04488072_11078	SAMN04488072_107182	Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family.	Energy-coupling factor transport system ATP-binding protein.	0.753
SFB22315.1	SFB22301.1	SAMN04488072_11078	SAMN04488072_11077	Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family.	Amino acid/amide ABC transporter substrate-binding protein, HAAT family.	0.986
SFB22315.1	SFB22327.1	SAMN04488072_11078	SAMN04488072_11079	Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family.	Amino acid/amide ABC transporter ATP-binding protein 1, HAAT family.	0.997
SFB22315.1	SFB22342.1	SAMN04488072_11078	SAMN04488072_11080	Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family.	Amino acid/amide ABC transporter membrane protein 2, HAAT family; Belongs to the binding-protein-dependent transport system permease family.	0.999
SFB22315.1	SFB22354.1	SAMN04488072_11078	SAMN04488072_11081	Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family.	Amino acid/amide ABC transporter membrane protein 1, HAAT family; Belongs to the binding-protein-dependent transport system permease family.	0.999
SFB22315.1	atpC	SAMN04488072_11078	SAMN04488072_11252	Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family.	F-type H+-transporting ATPase subunit epsilon; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.410
SFB22327.1	SFB22301.1	SAMN04488072_11079	SAMN04488072_11077	Amino acid/amide ABC transporter ATP-binding protein 1, HAAT family.	Amino acid/amide ABC transporter substrate-binding protein, HAAT family.	0.986