Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFA69415.1 | SFB25158.1 | SAMN04488072_10158 | SAMN04488072_111115 | Cysteine desulfurase. | Cysteine desulfurase. | 0.871 |
SFA69415.1 | SFB25268.1 | SAMN04488072_10158 | SAMN04488072_111130 | Cysteine desulfurase. | Molybdopterin or thiamine biosynthesis adenylyltransferase. | 0.545 |
SFA69415.1 | mnmA | SAMN04488072_10158 | SAMN04488072_10159 | Cysteine desulfurase. | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34. | 0.857 |
SFA69415.1 | thiI | SAMN04488072_10158 | SAMN04488072_111114 | Cysteine desulfurase. | Thiamine biosynthesis protein ThiI; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS. | 0.958 |
SFB19645.1 | mnmA | SAMN04488072_109108 | SAMN04488072_10159 | 16S rRNA (cytosine967-C5)-methyltransferase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34. | 0.557 |
SFB19645.1 | thiI | SAMN04488072_109108 | SAMN04488072_111114 | 16S rRNA (cytosine967-C5)-methyltransferase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | Thiamine biosynthesis protein ThiI; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS. | 0.982 |
SFB25143.1 | SFB25158.1 | SAMN04488072_111113 | SAMN04488072_111115 | Small acid-soluble spore protein A (major alpha-type SASP). | Cysteine desulfurase. | 0.563 |
SFB25143.1 | thiI | SAMN04488072_111113 | SAMN04488072_111114 | Small acid-soluble spore protein A (major alpha-type SASP). | Thiamine biosynthesis protein ThiI; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS. | 0.577 |
SFB25158.1 | SFA69415.1 | SAMN04488072_111115 | SAMN04488072_10158 | Cysteine desulfurase. | Cysteine desulfurase. | 0.871 |
SFB25158.1 | SFB25143.1 | SAMN04488072_111115 | SAMN04488072_111113 | Cysteine desulfurase. | Small acid-soluble spore protein A (major alpha-type SASP). | 0.563 |
SFB25158.1 | SFB25268.1 | SAMN04488072_111115 | SAMN04488072_111130 | Cysteine desulfurase. | Molybdopterin or thiamine biosynthesis adenylyltransferase. | 0.545 |
SFB25158.1 | ezrA | SAMN04488072_111115 | SAMN04488072_111117 | Cysteine desulfurase. | Septation ring formation regulator; Negative regulator of FtsZ ring formation; modulates the frequency and position of FtsZ ring formation. Inhibits FtsZ ring formation at polar sites. Interacts either with FtsZ or with one of its binding partners to promote depolymerization; Belongs to the EzrA family. | 0.522 |
SFB25158.1 | mnmA | SAMN04488072_111115 | SAMN04488072_10159 | Cysteine desulfurase. | tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34. | 0.538 |
SFB25158.1 | thiI | SAMN04488072_111115 | SAMN04488072_111114 | Cysteine desulfurase. | Thiamine biosynthesis protein ThiI; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS. | 0.992 |
SFB25246.1 | SFB25268.1 | SAMN04488072_111128 | SAMN04488072_111130 | Sulfur carrier protein. | Molybdopterin or thiamine biosynthesis adenylyltransferase. | 0.998 |
SFB25246.1 | thiG | SAMN04488072_111128 | SAMN04488072_111129 | Sulfur carrier protein. | Thiazole-phosphate synthase; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S. | 0.999 |
SFB25246.1 | thiI | SAMN04488072_111128 | SAMN04488072_111114 | Sulfur carrier protein. | Thiamine biosynthesis protein ThiI; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS. | 0.554 |
SFB25268.1 | SFA69415.1 | SAMN04488072_111130 | SAMN04488072_10158 | Molybdopterin or thiamine biosynthesis adenylyltransferase. | Cysteine desulfurase. | 0.545 |
SFB25268.1 | SFB25158.1 | SAMN04488072_111130 | SAMN04488072_111115 | Molybdopterin or thiamine biosynthesis adenylyltransferase. | Cysteine desulfurase. | 0.545 |
SFB25268.1 | SFB25246.1 | SAMN04488072_111130 | SAMN04488072_111128 | Molybdopterin or thiamine biosynthesis adenylyltransferase. | Sulfur carrier protein. | 0.998 |
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