Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SFB24238.1Protein of unknown function. (145 aa)    
Predicted Functional Partners:
SFB15305.1
Protein involved in sex pheromone biosynthesis.
  
     0.711
SFA97132.1
Uncharacterized protein YpmS.
  
     0.697
SFA73903.1
Tetratricopeptide repeat-containing protein.
  
     0.686
SFB35417.1
CBS domain-containing protein.
  
     0.667
SFB25105.1
Site-specific DNA-methyltransferase (adenine-specific).
  
     0.661
SFA72970.1
Riboflavin biosynthesis RibT protein.
  
     0.657
SFA81555.1
ABC-2 type transport system permease protein.
  
     0.649
SFB02200.1
GAF domain-containing protein.
    
 0.648
SFA97150.1
Lysophospholipase L1.
  
    0.610
SFB24225.1
Succinate dehydrogenase subunit C.
       0.596
Your Current Organism:
Lentibacillus halodurans
NCBI taxonomy Id: 237679
Other names: Bacillaceae bacterium 8-1, CGMCC 1.3702, DSM 18342, L. halodurans, Lentibacillus halodurans Yuan et al. 2007, strain 8-1
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