Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SFB23997.1Hypothetical protein. (328 aa)    
Predicted Functional Partners:
SFB23982.1
TRAP transporter, 4TM/12TM fusion protein.
 
    0.925
SFA96669.1
TRAP transporter, 4TM/12TM fusion protein.
 
    0.814
SFB11661.1
TRAP transporter, 4TM/12TM fusion protein.
 
    0.814
SFB12106.1
TRAP transporter, 4TM/12TM fusion protein.
 
    0.814
SFB22722.1
TRAP transporter, 4TM/12TM fusion protein.
 
    0.814
SFB22562.1
TRAP transporter, 4TM/12TM fusion protein.
 
    0.814
SFB23970.1
N-methylhydantoinase A.
       0.496
SFB23943.1
Ornithine cyclodeaminase.
       0.490
SFB23956.1
N-methylhydantoinase B.
       0.490
SFB24013.1
Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding Fis domains.
       0.479
Your Current Organism:
Lentibacillus halodurans
NCBI taxonomy Id: 237679
Other names: Bacillaceae bacterium 8-1, CGMCC 1.3702, DSM 18342, L. halodurans, Lentibacillus halodurans Yuan et al. 2007, strain 8-1
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