Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SFB26756.1Stage II sporulation protein Q. (310 aa)    
Predicted Functional Partners:
SFA71780.1
Stage III sporulation protein AH.
  
 
 0.997
SFB26741.1
Stage II sporulation protein D.
 
   
 0.879
SFA76314.1
Spore coat protein E.
  
  
 0.838
SFA70062.1
Stage II sporulation protein P.
  
  
 0.818
SFA73633.1
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
  
  
 0.782
SFA68974.1
Stage IV sporulation protein FA.
  
   
 0.753
SFB25855.1
Spore germination protein Q.
  
  
 0.752
SFB31848.1
Stage II sporulation protein E.
  
   
 0.752
SFA68844.1
Stage VI sporulation protein D.
  
  
 0.745
SFB25980.1
Penicillin-binding protein, 1A family.
  
    0.737
Your Current Organism:
Lentibacillus halodurans
NCBI taxonomy Id: 237679
Other names: Bacillaceae bacterium 8-1, CGMCC 1.3702, DSM 18342, L. halodurans, Lentibacillus halodurans Yuan et al. 2007, strain 8-1
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