Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SFB28236.1RNA polymerase sigma-70 factor, ECF subfamily. (174 aa)    
Predicted Functional Partners:
SFB28221.1
Transcriptional attenuator, LytR family.
  
    0.773
SFA87984.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.768
SFB08376.1
Transmembrane transcriptional regulator (anti-sigma factor RsiW).
 
 
 0.731
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.713
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.690
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 
 
 0.685
SFB34564.1
Sigma-70 region 2; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.592
SFA73797.1
Chemotaxis protein methyltransferase CheR.
    
   0.509
SFB22821.1
Protein of unknown function.
  
 
 0.509
SFB28253.1
Spo0E like sporulation regulatory protein.
       0.466
Your Current Organism:
Lentibacillus halodurans
NCBI taxonomy Id: 237679
Other names: Bacillaceae bacterium 8-1, CGMCC 1.3702, DSM 18342, L. halodurans, Lentibacillus halodurans Yuan et al. 2007, strain 8-1
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