Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFA70009.1 | SFA83174.1 | SAMN04488072_10196 | SAMN04488072_102181 | DNA polymerase III, delta subunit. | Hypothetical protein. | 0.980 |
SFA70009.1 | SFB21489.1 | SAMN04488072_10196 | SAMN04488072_11019 | DNA polymerase III, delta subunit. | DNA polymerase-3 subunit epsilon. | 0.959 |
SFA70009.1 | SFB24931.1 | SAMN04488072_10196 | SAMN04488072_11191 | DNA polymerase III, delta subunit. | DNA polymerase-3 subunit alpha. | 0.994 |
SFA70009.1 | SFB29786.1 | SAMN04488072_10196 | SAMN04488072_11416 | DNA polymerase III, delta subunit. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.997 |
SFA70009.1 | SFB31439.1 | SAMN04488072_10196 | SAMN04488072_11540 | DNA polymerase III, delta subunit. | DNA polymerase-3 subunit delta'. | 0.989 |
SFA70009.1 | dnaX | SAMN04488072_10196 | SAMN04488072_11530 | DNA polymerase III, delta subunit. | DNA polymerase III, tau subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.990 |
SFA70009.1 | polA | SAMN04488072_10196 | SAMN04488072_11176 | DNA polymerase III, delta subunit. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.615 |
SFA83174.1 | SFA70009.1 | SAMN04488072_102181 | SAMN04488072_10196 | Hypothetical protein. | DNA polymerase III, delta subunit. | 0.980 |
SFA83174.1 | SFA97564.1 | SAMN04488072_102181 | SAMN04488072_104260 | Hypothetical protein. | Bifunctional non-homologous end joining protein LigD. | 0.883 |
SFA83174.1 | SFB21489.1 | SAMN04488072_102181 | SAMN04488072_11019 | Hypothetical protein. | DNA polymerase-3 subunit epsilon. | 0.725 |
SFA83174.1 | SFB24931.1 | SAMN04488072_102181 | SAMN04488072_11191 | Hypothetical protein. | DNA polymerase-3 subunit alpha. | 0.980 |
SFA83174.1 | SFB29786.1 | SAMN04488072_102181 | SAMN04488072_11416 | Hypothetical protein. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.993 |
SFA83174.1 | SFB31439.1 | SAMN04488072_102181 | SAMN04488072_11540 | Hypothetical protein. | DNA polymerase-3 subunit delta'. | 0.924 |
SFA83174.1 | dnaX | SAMN04488072_102181 | SAMN04488072_11530 | Hypothetical protein. | DNA polymerase III, tau subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.924 |
SFA83174.1 | polA | SAMN04488072_102181 | SAMN04488072_11176 | Hypothetical protein. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.926 |
SFA97564.1 | SFA83174.1 | SAMN04488072_104260 | SAMN04488072_102181 | Bifunctional non-homologous end joining protein LigD. | Hypothetical protein. | 0.883 |
SFA97564.1 | SFB29786.1 | SAMN04488072_104260 | SAMN04488072_11416 | Bifunctional non-homologous end joining protein LigD. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.991 |
SFA97564.1 | polA | SAMN04488072_104260 | SAMN04488072_11176 | Bifunctional non-homologous end joining protein LigD. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.950 |
SFB21489.1 | SFA70009.1 | SAMN04488072_11019 | SAMN04488072_10196 | DNA polymerase-3 subunit epsilon. | DNA polymerase III, delta subunit. | 0.959 |
SFB21489.1 | SFA83174.1 | SAMN04488072_11019 | SAMN04488072_102181 | DNA polymerase-3 subunit epsilon. | Hypothetical protein. | 0.725 |
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