Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SFB35103.1Carbon starvation protein. (581 aa)    
Predicted Functional Partners:
SFB35113.1
Hypothetical protein.
 
     0.889
SFB35124.1
Arsenite efflux ATP-binding protein ArsA (TC 3.A.4.1.1).
     0.885
SFB35135.1
Zinc-binding alcohol dehydrogenase/oxidoreductase.
 
     0.477
SFB35089.1
Uncharacterized conserved protein YjgD, DUF1641 family.
       0.434
SFB35076.1
Formate dehydrogenase major subunit.
       0.401
Your Current Organism:
Lentibacillus halodurans
NCBI taxonomy Id: 237679
Other names: Bacillaceae bacterium 8-1, CGMCC 1.3702, DSM 18342, L. halodurans, Lentibacillus halodurans Yuan et al. 2007, strain 8-1
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