Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SFB35147.1Uncharacterized membrane protein YcaP, DUF421 family. (285 aa)    
Predicted Functional Partners:
SFB35177.1
Stage V sporulation protein AD.
 
  
 0.897
SFB35185.1
Stage V sporulation protein AC.
 
  
 0.870
SFB35167.1
Stage V sporulation protein AE.
 
  
 0.855
SFB35206.1
Protein of unknown function.
 
     0.843
SFA85500.1
GerA spore germination protein.
 
  
 0.617
SFB14294.1
Spore germination protein.
 
  
 0.613
SFB14332.1
Spore germination protein.
 
  
 0.578
SFB25117.1
Sporulation protein YtfJ.
  
     0.548
SFB35156.1
Protein of unknown function.
       0.525
SFA73633.1
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
  
     0.519
Your Current Organism:
Lentibacillus halodurans
NCBI taxonomy Id: 237679
Other names: Bacillaceae bacterium 8-1, CGMCC 1.3702, DSM 18342, L. halodurans, Lentibacillus halodurans Yuan et al. 2007, strain 8-1
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