STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SET48421.1Bacillopeptidase F. (1456 aa)    
Predicted Functional Partners:
SES97807.1
Hypothetical protein.
 
 0.751
SEU05755.1
Protein of unknown function.
 
 0.735
SES90731.1
Ca-activated chloride channel family protein.
  
   
 0.711
SET74454.1
Hypothetical protein.
  
 0.652
SET74483.1
Hypothetical protein.
  
 0.652
SET83401.1
Hypothetical protein.
  
 0.652
SET34324.1
D-alanyl-D-alanine carboxypeptidase / D-alanyl-D-alanine-endopeptidase (penicillin-binding protein 4).
  
  
  0.616
SES73101.1
Bacillolysin; Extracellular zinc metalloprotease.
  
  
 0.597
SET93652.1
Peptidase family M28.
  
  
 0.583
SES96662.1
Sporulation lipoprotein, YhcN/YlaJ family.
  
     0.574
Your Current Organism:
Salinibacillus kushneri
NCBI taxonomy Id: 237682
Other names: AS 1.3566, Bacillaceae bacterium 8-2, Bacillaceae bacterium W11-1, JCM 12390, S. kushneri, Salinibacillus kushneri Ren and Zhou 2005, strain 8-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.