STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ29714.1Hypothetical protein. (656 aa)    
Predicted Functional Partners:
EAQ29712.1
Virulence-associated protein E; COG0358 DNA primase (bacterial type).
 
     0.843
EAQ29713.1
Probably methylase/helicase; COG0778 Nitroreductase.
 
     0.833
EAQ29723.1
Hypothetical protein.
 
     0.795
EAQ29772.1
TrwC protein; COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member.
  
  
 0.779
EAQ29790.1
Putative F pilus assembly protein traF; COG0681 Signal peptidase I.
 
     0.772
EAQ29793.1
TraC; COG3451 Type IV secretory pathway, VirB4 components.
  
     0.770
EAQ29797.1
Putative conjugative transfer protein TraE.
  
     0.770
EAQ29783.1
TraG.
  
     0.769
EAQ29795.1
Putative conjugative transfer factor, TraB.
  
     0.768
EAQ29771.1
TraD; COG3505 Type IV secretory pathway, VirD4 components.
 
   
 0.766
Your Current Organism:
Erythrobacter sp. NAP1
NCBI taxonomy Id: 237727
Other names: E. sp. NAP1
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