Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BBD35_13630Transcriptional regulator; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (530 aa)    
Predicted Functional Partners:
AQX14313.1
Multidrug transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.951
AQX13344.1
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.951
AQX13345.1
AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.876
AQX13230.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.754
AQX14305.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.714
AQX11952.1
Secretion protein HlyD; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.677
AQX11951.1
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.674
AQX12745.1
Secretion protein HlyD; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.638
AQX12744.1
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.635
AQX11491.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.505
Your Current Organism:
Elizabethkingia meningoseptica
NCBI taxonomy Id: 238
Other names: ATCC 13253, CCUG 214, CIP 60.57, Chryseobacterium (Flavobacterium) meningosepticum, Chryseobacterium meningosepticum, DSM 2800, E. meningoseptica, Flavobacterium menginosepticum, Flavobacterium meningosepticum, IAM 14198, IFO 12535, JCM 21065, LMG 12279, LMG:12279, NBRC 12535, NCTC 10016
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