STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXP06813.1Proteasome protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (310 aa)    
Predicted Functional Partners:
KXP06814.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.782
rrf
5S ribosomal RNA; Cleaves both 3' and 5' ssDNA extremities of branched DNA structures; Belongs to the NucS endonuclease family.
  
     0.669
whiB-3
WhiB family transcriptional regulator; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
  
     0.652
KXP06816.1
DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.649
whiB-5
Transcriptional regulator; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
  
     0.638
KXP06815.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.570
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
 
     0.560
KXP07825.1
Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.559
KXP13879.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.545
KXP03844.1
Septum formation initiator family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.534
Your Current Organism:
Tsukamurella pseudospumae
NCBI taxonomy Id: 239498
Other names: DSM 44118, JCM 13375, JCM 15929 [[Tsukamurella sunchonensis]], KCTC 9827 [[Tsukamurella sunchonensis]], NCIMB 13963, NRRL B-24668 [[Tsukamurella sunchonensis]], T. pseudospumae, Tsukamurella pseudospumae Nam et al. 2004 emend. Teng et al. 2016, Tsukamurella sp. SCNU5, Tsukamurella sp. U5, Tsukamurella sunchonensis, Tsukamurella sunchonensis Seong et al. 2008, strain N1176, strain SCNU5 [[Tsukamurella sunchonensis]]
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.