STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACP_0484Hypothetical protein; Identified by glimmer; putative. (155 aa)    
Predicted Functional Partners:
sodA
Superoxide dismutase, Mn; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
   
 
 0.794
ACP_0485
Putative thiol-disulfide interchange protein; Identified by match to protein family HMM PF00578; match to protein family HMM PF08534.
       0.775
ybeY
Conserved hypothetical protein TIGR00043; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
    
   0.773
ACP_0561
Hypothetical protein; Identified by glimmer; putative.
  
    0.726
rpsQ
Ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
   
   0.718
ACP_1257
Conserved hypothetical protein; Identified by similarity to GB:AAS70517.1.
  
     0.717
ACP_1131
Outer membrane efflux protein; Identified by match to protein family HMM PF02321.
  
     0.697
ACP_2487
Hypothetical protein; Identified by glimmer; putative.
  
     0.650
ACP_0417
Hypothetical protein; Identified by glimmer; putative.
  
     0.645
ACP_2146
Hypothetical protein; Identified by glimmer; putative.
  
     0.636
Your Current Organism:
Acidobacterium capsulatum
NCBI taxonomy Id: 240015
Other names: A. capsulatum ATCC 51196, Acidobacterium capsulatum ATCC 51196, Acidobacterium capsulatum str. ATCC 51196, Acidobacterium capsulatum strain ATCC 51196
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.