STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACP_0530Conserved hypothetical protein; Identified by similarity to GB:CAD17103.1. (595 aa)    
Predicted Functional Partners:
ACP_0687
Outer membrane efflux protein family; Identified by match to protein family HMM PF02321.
  
     0.568
ACP_2951
Putative lipoprotein.
  
     0.548
ACP_2634
Fibronectin type III domain protein; Identified by match to protein family HMM PF00041.
  
     0.545
ACP_2797
TonB-dependent receptor; Identified by match to protein family HMM PF00593.
  
     0.522
ACP_3198
Hypothetical protein; Identified by glimmer; putative.
  
     0.520
ruvC
Crossover junction endodeoxyribonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.
       0.494
ACP_1847
Hypothetical protein; Identified by glimmer; putative.
  
     0.494
ACP_1290
Putative protease; Identified by similarity to SP:P42790; match to protein family HMM PF09286.
  
     0.486
ACP_1574
IPT/TIG domain protein; Identified by match to protein family HMM PF01833.
  
     0.478
ACP_1888
Hypothetical protein; Identified by glimmer; putative.
  
     0.468
Your Current Organism:
Acidobacterium capsulatum
NCBI taxonomy Id: 240015
Other names: A. capsulatum ATCC 51196, Acidobacterium capsulatum ATCC 51196, Acidobacterium capsulatum str. ATCC 51196, Acidobacterium capsulatum strain ATCC 51196
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.