STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACP_0551Glycosyl hydrolase family 88 protein; Identified by match to protein family HMM PF07470. (442 aa)    
Predicted Functional Partners:
ACP_0550
Lipase/acylhydrolase domain protein; Identified by match to protein family HMM PF00657.
 
     0.878
ACP_0554
Glycosyl hydrolase, family 28; Identified by match to protein family HMM PF00295; Belongs to the glycosyl hydrolase 28 family.
 
     0.850
ACP_0553
Conserved hypothetical protein.
 
     0.771
ACP_0273
Conserved hypothetical protein.
 
     0.745
ACP_0775
F5/8 type C domain/sugar binding domain protein; Identified by match to protein family HMM PF00754; match to protein family HMM PF02837.
  
     0.712
ACP_2679
Polygalacturonase; Identified by match to protein family HMM PF00295; Belongs to the glycosyl hydrolase 28 family.
 
     0.710
ACP_0072
Putative beta-galactosidase; Identified by match to protein family HMM PF00703; match to protein family HMM PF02836; match to protein family HMM PF02837; Belongs to the glycosyl hydrolase 2 family.
 
     0.656
rha1
Rhamnogalacturonan acetylesterase; Identified by similarity to SP:Q00017; match to protein family HMM PF00657.
 
     0.650
ACP_2677
Endo-polygalacturonase/pectinesterase; Identified by match to protein family HMM PF00295; match to protein family HMM PF01095.
 
   
 0.643
ACP_0552
Glycosyl hydrolase, family 35; Identified by match to protein family HMM PF01301; match to protein family HMM PF02449.
 
  
 0.641
Your Current Organism:
Acidobacterium capsulatum
NCBI taxonomy Id: 240015
Other names: A. capsulatum ATCC 51196, Acidobacterium capsulatum ATCC 51196, Acidobacterium capsulatum str. ATCC 51196, Acidobacterium capsulatum strain ATCC 51196
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.