STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACP_0559Rhamnulokinase; Identified by similarity to SP:P32171; match to protein family HMM PF00370. (475 aa)    
Predicted Functional Partners:
rhaI
L-rhamnose isomerase; Identified by similarity to GB:BAD14073.1.
 
  
 0.975
rhaD
Rhamnulose-1-phosphate aldolase/alcohol dehydrogenase; Identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM PF08659; match to protein family HMM TIGR02632.
 
  
 0.933
ACP_0557
Putative sugar uptake ABC transporter, solute-binding protein; Identified by match to protein family HMM PF00532; match to protein family HMM PF09339.
 
  
 0.724
ACP_0909
Identified by match to protein family HMM PF02449; match to protein family HMM PF08532.
  
    0.650
ACP_1241
Identified by match to protein family HMM PF02449; match to protein family HMM PF08532; match to protein family HMM PF08533.
  
    0.648
ACP_0767
Putative L-ribulose-5-phosphate 4-epimerase; Identified by match to protein family HMM PF00596.
 
  
 0.593
ACP_0864
Beta-galactosidase; Identified by match to protein family HMM PF02449; match to protein family HMM PF08532.
  
    0.584
ACP_2791
Putative L-ribulose-5-phosphate 4-epimerase; Identified by match to protein family HMM PF00596.
 
  
 0.554
ACP_2788
Putative L-fucose isomerase.
 
  
 0.541
ACP_1939
Identified by match to protein family HMM PF01261; match to protein family HMM PF07582.
 
  
 0.531
Your Current Organism:
Acidobacterium capsulatum
NCBI taxonomy Id: 240015
Other names: A. capsulatum ATCC 51196, Acidobacterium capsulatum ATCC 51196, Acidobacterium capsulatum str. ATCC 51196, Acidobacterium capsulatum strain ATCC 51196
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.