STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACP_0565Conserved hypothetical protein. (69 aa)    
Predicted Functional Partners:
ACP_0564
Hypothetical protein; Identified by glimmer; putative.
       0.773
ACP_2717
Hypothetical protein; Identified by glimmer; putative.
  
     0.705
ACP_1847
Hypothetical protein; Identified by glimmer; putative.
  
   0.627
ACP_0078
Hypothetical protein; Identified by glimmer; putative.
  
     0.589
ACP_2127
RDD domain protein; Identified by match to protein family HMM PF06271.
 
     0.583
rplF
Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.552
ACP_3366
Sporulation/cell division repeat protein; Identified by match to protein family HMM PF05036.
 
     0.551
ACP_2167
Putative lipoprotein.
  
 
 
 0.544
ACP_1398
Cna protein B-type domain protein; Identified by match to protein family HMM PF05738; match to protein family HMM TIGR03304.
  
     0.527
ACP_3141
TonB-dependent receptor domain protein; Identified by match to protein family HMM PF00593.
  
     0.519
Your Current Organism:
Acidobacterium capsulatum
NCBI taxonomy Id: 240015
Other names: A. capsulatum ATCC 51196, Acidobacterium capsulatum ATCC 51196, Acidobacterium capsulatum str. ATCC 51196, Acidobacterium capsulatum strain ATCC 51196
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.