STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACP_0640Putative membrane protein. (186 aa)    
Predicted Functional Partners:
ACP_2324
Gas vesicle protein, GvpL/GvpF family; Identified by match to protein family HMM PF06386.
  
     0.629
ACP_0638
CBS/transporter domain protein; Identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471.
       0.588
ACP_2259
Antibiotic biosynthesis monooxygenase domain protein; Identified by match to protein family HMM PF03992.
  
     0.587
ACP_0354
Hypothetical protein; Identified by glimmer; putative.
  
     0.566
ACP_1873
BNR/Asp-box repeat protein; Identified by match to protein family HMM PF02012.
  
     0.534
ACP_0516
Response regulator receiver domain protein; Identified by match to protein family HMM PF00072.
  
     0.520
ACP_0984
Conserved hypothetical protein.
  
     0.503
ACP_0641
Hypothetical protein; Identified by glimmer; putative.
       0.499
ACP_1064
Putative methyltransferase, TIGR00027 family; Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity.
  
     0.499
ACP_2951
Putative lipoprotein.
  
     0.498
Your Current Organism:
Acidobacterium capsulatum
NCBI taxonomy Id: 240015
Other names: A. capsulatum ATCC 51196, Acidobacterium capsulatum ATCC 51196, Acidobacterium capsulatum str. ATCC 51196, Acidobacterium capsulatum strain ATCC 51196
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.