STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACP_0988Identified by match to protein family HMM PF00150; Belongs to the glycosyl hydrolase 5 (cellulase A) family. (404 aa)    
Predicted Functional Partners:
ACP_1014
Identified by match to protein family HMM PF00759.
 
 
 0.952
ACP_2738
Hypothetical protein; Identified by glimmer; putative.
 
 
 0.939
bxlB1
Xylann 1,4-beta-xylosidase; Identified by similarity to GB:CAD48309.1; match to protein family HMM PF00933; match to protein family HMM PF01915.
 
  
 0.935
bxlB2
Identified by similarity to GB:CAD48309.1; match to protein family HMM PF00933; match to protein family HMM PF01915; match to protein family HMM PF07691.
 
  
 0.935
bxlB
Identified by similarity to GB:CAD48309.1; match to protein family HMM PF00933; match to protein family HMM PF01915; match to protein family HMM PF07691.
 
  
 0.934
cbg-1
Beta-glucosidase; Identified by similarity to SP:P27034; match to protein family HMM PF00933; match to protein family HMM PF01915; Belongs to the glycosyl hydrolase 3 family.
 
  
 0.934
ACP_2108
Beta-glucosidase; Identified by similarity to SP:P27034; match to protein family HMM PF00933; match to protein family HMM PF01915.
 
  
 0.928
ACP_0020
Glycosyl hydrolase family, 3; Identified by match to protein family HMM PF00933; match to protein family HMM PF01915.
 
  
 0.927
acsAB
Cellulose synthase I; Identified by similarity to SP:P21877; match to protein family HMM PF00535; match to protein family HMM PF03170; match to protein family HMM PF07238; match to protein family HMM TIGR03030.
    
  0.901
ACP_0267
Conserved hypothetical protein; Identified by similarity to SP:P37512; match to protein family HMM PF03190.
   
 
 0.833
Your Current Organism:
Acidobacterium capsulatum
NCBI taxonomy Id: 240015
Other names: A. capsulatum ATCC 51196, Acidobacterium capsulatum ATCC 51196, Acidobacterium capsulatum str. ATCC 51196, Acidobacterium capsulatum strain ATCC 51196
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.