STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACP_1104Type IV prepilin leader peptidase family protein; Identified by match to protein family HMM PF01478. (191 aa)    
Predicted Functional Partners:
ACP_1105
Putative flp pilus assembly protein CpaB; Identified by match to protein family HMM PF08666; match to protein family HMM TIGR03177.
 
  
 0.991
ACP_1109
Bacterial type II secretion system protein F domain protein; Identified by match to protein family HMM PF00482.
 
  
 0.973
ACP_1107
Type II secretion system protein.
 
  
 0.967
ACP_1106
Type II/III secretion system protein; Identified by similarity to GB:CAE29119.1; match to protein family HMM PF00263; match to protein family HMM PF04972; match to protein family HMM TIGR01409; Belongs to the bacterial secretin family.
 
  
 0.954
ACP_1110
Type II secretion system protein; Identified by match to protein family HMM PF00482.
 
   
 0.938
ACP_1108
Type II/IV secretion system protein; Identified by match to protein family HMM PF00437.
 
   
 0.927
ACP_1103
Hypothetical protein; Identified by glimmer; putative.
  
  
 0.807
ACP_1112
Conserved hypothetical protein; Identified by match to protein family HMM PF02643.
 
     0.794
ACP_1191
Transporter, type IV (conjugal DNA-protein transfer or VirB) secretory pathway (IVSP) family; Identified by match to protein family HMM PF00437.
 
   
 0.741
ACP_3176
Type II/IV secretion system protein; Identified by match to protein family HMM PF00437.
 
   
 0.740
Your Current Organism:
Acidobacterium capsulatum
NCBI taxonomy Id: 240015
Other names: A. capsulatum ATCC 51196, Acidobacterium capsulatum ATCC 51196, Acidobacterium capsulatum str. ATCC 51196, Acidobacterium capsulatum strain ATCC 51196
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.