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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACP_1237Conserved domain protein; Identified by similarity to GB:AAM37395.1. (282 aa)    
Predicted Functional Partners:
proC
Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
       0.778
ACP_2155
Cna protein B-type domain protein; Identified by match to protein family HMM PF05738.
  
     0.483
ACP_3141
TonB-dependent receptor domain protein; Identified by match to protein family HMM PF00593.
  
     0.483
ACP_1917
Peptidase, M13 family; Identified by match to protein family HMM PF01431; match to protein family HMM PF05649.
  
    0.460
ACP_2858
Peptidase, M56 family/TonB domain protein; Identified by match to protein family HMM PF05569; match to protein family HMM TIGR01352.
  
     0.441
ACP_2237
Hypothetical protein; Identified by glimmer; putative.
  
     0.438
ACP_2269
Transporter, outer membrane receptor (OMR) family; Identified by similarity to SP:P38370.
  
     0.430
ACP_0910
Cna protein B-type domain protein; Identified by match to protein family HMM PF05738.
  
     0.426
ACP_2953
Peptidase, M13 family; Identified by match to protein family HMM PF01431; match to protein family HMM PF05649.
  
    0.403
Your Current Organism:
Acidobacterium capsulatum
NCBI taxonomy Id: 240015
Other names: A. capsulatum ATCC 51196, Acidobacterium capsulatum ATCC 51196, Acidobacterium capsulatum str. ATCC 51196, Acidobacterium capsulatum strain ATCC 51196
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