STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACP_1268Hypothetical protein; Identified by glimmer; putative. (946 aa)    
Predicted Functional Partners:
ACP_1269
Tat pathway signal sequence domain protein; Identified by match to protein family HMM PF07944; match to protein family HMM TIGR01409.
     0.887
rha1
Rhamnogalacturonan acetylesterase; Identified by similarity to SP:Q00017; match to protein family HMM PF00657.
  
     0.738
ACP_2692
Putative pectinesterase; Identified by match to protein family HMM PF01095.
  
     0.714
ACP_2735
Conserved hypothetical protein; Identified by similarity to GB:AAM39029.1.
  
     0.707
ACP_2793
Identified by similarity to SP:P82593; match to protein family HMM PF02018; match to protein family HMM PF06964.
 
     0.647
ACP_2677
Endo-polygalacturonase/pectinesterase; Identified by match to protein family HMM PF00295; match to protein family HMM PF01095.
  
     0.621
ACP_0550
Lipase/acylhydrolase domain protein; Identified by match to protein family HMM PF00657.
  
     0.612
ACP_2792
Conserved hypothetical protein; Identified by similarity to GB:AAO75244.1; match to protein family HMM PF07944; match to protein family HMM TIGR01409.
  
     0.534
ACP_2679
Polygalacturonase; Identified by match to protein family HMM PF00295; Belongs to the glycosyl hydrolase 28 family.
  
     0.508
ACP_0554
Glycosyl hydrolase, family 28; Identified by match to protein family HMM PF00295; Belongs to the glycosyl hydrolase 28 family.
  
     0.507
Your Current Organism:
Acidobacterium capsulatum
NCBI taxonomy Id: 240015
Other names: A. capsulatum ATCC 51196, Acidobacterium capsulatum ATCC 51196, Acidobacterium capsulatum str. ATCC 51196, Acidobacterium capsulatum strain ATCC 51196
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.