STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACP_1270Conserved hypothetical protein; Identified by match to protein family HMM PF05960. (628 aa)    
Predicted Functional Partners:
ACP_3277
Dipeptidyl peptidase, putative; Identified by similarity to GB:BAA11872.1; match to protein family HMM PF00326; match to protein family HMM PF00930.
 
    0.850
dapA2
Dihydrodipicolinate synthase; Identified by match to protein family HMM PF00701; Belongs to the DapA family.
  
     0.522
gtaA
Identified by similarity to GB:BAA86934.1; match to protein family HMM PF08760.
  
     0.467
argE
Acetylornithine deacetylase; Identified by similarity to GB:AAC82366.1; match to protein family HMM PF01546; match to protein family HMM PF07687.
  
     0.454
ACP_0702
Conserved hypothetical protein; Identified by similarity to GB:AAO79199.1; match to protein family HMM PF04041.
  
     0.440
ACP_1272
3-deoxy-7-phosphoheptulonate synthase; Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino- heptulosonate-7-phosphate (DAHP).
       0.436
Your Current Organism:
Acidobacterium capsulatum
NCBI taxonomy Id: 240015
Other names: A. capsulatum ATCC 51196, Acidobacterium capsulatum ATCC 51196, Acidobacterium capsulatum str. ATCC 51196, Acidobacterium capsulatum strain ATCC 51196
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.