Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
ACP_1328 | ACP_1571 | IS3 family transposase orfB; Identified by match to protein family HMM PF00665. | ISAca4, transposase orfA; Identified by match to protein family HMM PF01527. | 0.694 |
ACP_1569 | ACP_1570 | Fic family protein; Identified by match to protein family HMM PF02661. | ISAca4, transposase orfB; The stop site for this ORF lies outside the terminus of the IS element; identified by match to protein family HMM PF00665. | 0.542 |
ACP_1569 | ACP_1571 | Fic family protein; Identified by match to protein family HMM PF02661. | ISAca4, transposase orfA; Identified by match to protein family HMM PF01527. | 0.470 |
ACP_1570 | ACP_1569 | ISAca4, transposase orfB; The stop site for this ORF lies outside the terminus of the IS element; identified by match to protein family HMM PF00665. | Fic family protein; Identified by match to protein family HMM PF02661. | 0.542 |
ACP_1570 | ACP_1571 | ISAca4, transposase orfB; The stop site for this ORF lies outside the terminus of the IS element; identified by match to protein family HMM PF00665. | ISAca4, transposase orfA; Identified by match to protein family HMM PF01527. | 0.902 |
ACP_1570 | ACP_1572 | ISAca4, transposase orfB; The stop site for this ORF lies outside the terminus of the IS element; identified by match to protein family HMM PF00665. | Conserved domain protein; Identified by similarity to GB:BAC71251.1. | 0.471 |
ACP_1571 | ACP_1328 | ISAca4, transposase orfA; Identified by match to protein family HMM PF01527. | IS3 family transposase orfB; Identified by match to protein family HMM PF00665. | 0.694 |
ACP_1571 | ACP_1569 | ISAca4, transposase orfA; Identified by match to protein family HMM PF01527. | Fic family protein; Identified by match to protein family HMM PF02661. | 0.470 |
ACP_1571 | ACP_1570 | ISAca4, transposase orfA; Identified by match to protein family HMM PF01527. | ISAca4, transposase orfB; The stop site for this ORF lies outside the terminus of the IS element; identified by match to protein family HMM PF00665. | 0.902 |
ACP_1571 | ACP_1572 | ISAca4, transposase orfA; Identified by match to protein family HMM PF01527. | Conserved domain protein; Identified by similarity to GB:BAC71251.1. | 0.542 |
ACP_1571 | ACP_2609 | ISAca4, transposase orfA; Identified by match to protein family HMM PF01527. | IS3 family transposase orfB; Identified by match to protein family HMM PF00665. | 0.752 |
ACP_1572 | ACP_1570 | Conserved domain protein; Identified by similarity to GB:BAC71251.1. | ISAca4, transposase orfB; The stop site for this ORF lies outside the terminus of the IS element; identified by match to protein family HMM PF00665. | 0.471 |
ACP_1572 | ACP_1571 | Conserved domain protein; Identified by similarity to GB:BAC71251.1. | ISAca4, transposase orfA; Identified by match to protein family HMM PF01527. | 0.542 |
ACP_2609 | ACP_1571 | IS3 family transposase orfB; Identified by match to protein family HMM PF00665. | ISAca4, transposase orfA; Identified by match to protein family HMM PF01527. | 0.752 |