STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACP_1746Identified by match to protein family HMM PF04371; Belongs to the agmatine deiminase family. (368 aa)    
Predicted Functional Partners:
ACP_1745
Hydrolase, carbon-nitrogen family; Identified by match to protein family HMM PF00795.
 
 0.999
ACP_1744
Arginine decarboxylase, pyruvoyl-dependent; Identified by match to protein family HMM PF01862; match to protein family HMM TIGR00286.
    
  0.940
tadA
Cytidine and deoxycytidylate deaminase zinc-binding region; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.
       0.771
ACP_1747
Conserved hypothetical protein; Identified by similarity to GB:AAS11056.1.
       0.768
arsC
Arsenate reductase; Identified by similarity to SP:P45947; match to protein family HMM PF01451; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
     
 0.634
ohr
Organic hydroperoxide resistance protein; Identified by similarity to SP:O68390; match to protein family HMM PF02566.
      
 0.633
ACP_1749
HAD-superfamily hydrolase, subfamily IIB; Identified by match to protein family HMM PF00702; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR01484.
       0.452
ACP_1751
Transglycosylase SLT domain protein; Identified by match to protein family HMM PF01464.
       0.452
Your Current Organism:
Acidobacterium capsulatum
NCBI taxonomy Id: 240015
Other names: A. capsulatum ATCC 51196, Acidobacterium capsulatum ATCC 51196, Acidobacterium capsulatum str. ATCC 51196, Acidobacterium capsulatum strain ATCC 51196
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.