Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ACP_1908Conserved hypothetical protein; Identified by match to protein family HMM PF09335. (199 aa)    
Predicted Functional Partners:
moaB
Molybdenum cofactor biosynthesis protein B; Identified by match to protein family HMM PF00994; match to protein family HMM TIGR00177.
       0.742
ACP_1890
Hypothetical protein; Identified by glimmer; putative.
  
     0.596
ACP_0219
Hypothetical protein; Identified by glimmer; putative.
  
     0.568
ACP_2051
Hypothetical protein; Identified by glimmer; putative.
  
     0.559
ACP_1367
Hypothetical protein; Identified by glimmer; putative.
  
     0.540
ACP_2773
Hypothetical protein; Identified by glimmer; putative.
  
     0.526
ACP_2157
Hypothetical protein; Identified by glimmer; putative.
  
     0.520
ACP_0061
TPR domain protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719.
  
     0.506
ACP_1760
Hypothetical protein; Identified by glimmer; putative.
  
     0.503
ACP_2717
Hypothetical protein; Identified by glimmer; putative.
  
     0.501
Your Current Organism:
Acidobacterium capsulatum
NCBI taxonomy Id: 240015
Other names: A. capsulatum ATCC 51196, Acidobacterium capsulatum ATCC 51196, Acidobacterium capsulatum str. ATCC 51196, Acidobacterium capsulatum strain ATCC 51196
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