STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACP_1939Identified by match to protein family HMM PF01261; match to protein family HMM PF07582. (319 aa)    
Predicted Functional Partners:
ACP_2132
Identified by match to protein family HMM PF01408; match to protein family HMM PF02894.
 
  
 0.735
ACP_0194
Oxidoreductase, Gfo/Idh/MocA family; Identified by match to protein family HMM PF01408; match to protein family HMM PF02894.
 
  
 0.724
ACP_3088
Oxidoreductase, Gfo/Idh/MocA family; Identified by match to protein family HMM PF01408; match to protein family HMM PF02894.
 
  
 0.719
ACP_1955
Oxidoreductase, Gfo/Idh/MocA family; Identified by match to protein family HMM PF01408; match to protein family HMM PF02894.
 
  
 0.699
ACP_1938
Putative membrane protein.
       0.625
ACP_2378
Oxidoreductase, NAD-binding; Identified by match to protein family HMM PF01408; match to protein family HMM PF02894.
 
  
 0.621
ACP_0499
Oxidoreductase, NAD-binding; Identified by match to protein family HMM PF01408; match to protein family HMM PF02894.
 
  
 0.597
ACP_0559
Rhamnulokinase; Identified by similarity to SP:P32171; match to protein family HMM PF00370.
 
  
 0.531
ACP_0858
Putative 2-dehydro-3-deoxygluconokinase; Identified by match to protein family HMM PF00294.
 
  
 0.514
rbsK
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
 
  
 0.489
Your Current Organism:
Acidobacterium capsulatum
NCBI taxonomy Id: 240015
Other names: A. capsulatum ATCC 51196, Acidobacterium capsulatum ATCC 51196, Acidobacterium capsulatum str. ATCC 51196, Acidobacterium capsulatum strain ATCC 51196
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