Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
Experiments
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[Homology]
Score
ACP_1963Hypothetical protein; Identified by glimmer; putative. (241 aa)    
Predicted Functional Partners:
alaS
alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
       0.752
ACP_0417
Hypothetical protein; Identified by glimmer; putative.
  
     0.742
ACP_2366
Putative bacteriophage portal protein; Identified by match to protein family HMM PF04860.
  
     0.742
ACP_3539
Cna protein B-type domain protein; Identified by match to protein family HMM PF05738.
  
     0.703
moaE
Molybdopterin converting factor, subunit 2; Identified by similarity to SP:O31705; match to protein family HMM PF02391; match to protein family HMM PF02597; match to protein family HMM TIGR01682.
  
  
 0.694
ACP_0435
Conserved domain protein; Identified by similarity to GB:AAM41488.1.
  
     0.688
ACP_3181
Conserved domain protein; Identified by similarity to GB:CAH17350.1.
  
     0.685
ACP_3238
Conserved domain protein; Identified by similarity to GB:CAH17350.1.
  
     0.651
ACP_0386
Hypothetical protein; Identified by glimmer; putative.
  
     0.649
ACP_0401
Conserved hypothetical protein.
  
     0.611
Your Current Organism:
Acidobacterium capsulatum
NCBI taxonomy Id: 240015
Other names: A. capsulatum ATCC 51196, Acidobacterium capsulatum ATCC 51196, Acidobacterium capsulatum str. ATCC 51196, Acidobacterium capsulatum strain ATCC 51196
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